Quantum Package 2.0: An Open-Source Determinant-Driven Suite of Programs.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00176
Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00643
Local Energy Decomposition of Open-Shell Molecular Systems in the Domain-Based Local Pair Natural Orbital Coupled Cluster Framework
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.8b01145
The SIRAH 2.0 Force Field: Altius, Fortius, Citius.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00006
General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01123
Efficient Implementation of Ab Initio Quantum Embedding in Periodic Systems: Density Matrix Embedding Theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00933
Intricacies of DFT+U, Not Only in a Numeric Atom Centered Orbital Framework.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01211
Investigation of the Exchange-Correlation Potentials of Functionals Based on the Adiabatic Connection Interpolation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01037
Predicting Activity Cliffs with Free-Energy Perturbation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01290
ωB2PLYP & ωB2GPPLYP: the first two double-hybrid density functionals with long-range correction optimized for excitation energies.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00013
Generalized Hartree-Fock with Nonperturbative Treatment of Strong Magnetic Fields: Application to Molecular Spin Phase Transitions.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01140
Outer Membrane Proteins OmpA, FhuA, OmpF, EstA, BtuB, and OmpX Have Unique Lipopolysaccharide Fingerprints.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01059
Host-Guest Relative Binding Affinities at Density-Functional Theory Level from Semiempirical Molecular Dynamics Simulations.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01280
Interactions of Water and Alkanes: Modifying Additive Force Fields to Account for Polarization Effects.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00016
Statistical Uncertainty Analysis for Small-Sample, High Log-Variance Data: Cautions for Bootstrapping and Bayesian Bootstrapping.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00015
Performance of Semilocal Kinetic Energy Functionals for Orbital-Free Density Functional Theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00183
Vertical Ionization Energies and Electron Affinities of Native and Damaged DNA Bases, Nucleotides, and Pairs from Density Functional Theory Calculations: Model Assessment and Implications for DNA Damage Recognition and Repair.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00645
Fully Polarizable QM/Fluctuating Charge Approach to Two-Photon Absorption of Aqueous Solutions.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00305
Self-Assembly Mechanisms of Triblock Janus Particles.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00713
Improving Vibrational Mode Interpretation Using Bayesian Regression.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00439
A heterogeneous CPU + GPU algorithm for variational two-electron reduced-density matrix driven complete active space self-consistent field theory.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00768
ReaxFF Parameter Optimization with Monte Carlo and Evolutionary Algorithms: Guidelines and Insights.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00769
Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.9b00310
UV Absorption and Magnetic Circular Dichroism Spectra of Purine, Adenine, and Guanine: A Coupled Cluster Study in Vacuo and in Aqueous Solution.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00930
Iterative unbiasing of quasi-equilibrium sampling.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00907
Dynamical and Environmental Effects on the Optical Properties of an Heteroleptic Ru(II)-Polypyridine Complex: A Multilevel Approach Combining Accurate Ground and Excited State QM-Derived Force Fields, MD and TD-DFT.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01031
Cation-π Interactions between Methylated Ammonium Groups and Tryptophan in the CHARMM36 Additive Force Field.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00839
HFLD: A Non-empirical London Dispersion Corrected Hartree-Fock Method for the Quantification and Analysis of Noncovalent Interaction Energies of Large Molecular Systems.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00425
Scalable Electron Correlation Methods. 6. Local Spin-Restricted Open-Shell Second-Order Møller-Plesset Perturbation Theory Using Pair Natural Orbitals: PNO-RMP2.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01012
Characterizing protein-ligand binding using atomistic simulation and machine learning: Application to drug resistance in HIV-1 protease.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00781
A Modified Shifted Force Approach to the Wolf Summation.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00343
An Improved Lower Bound to the Ground-State Energy.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00128
EnzyDock: Protein-Ligand Docking of Multiple Reactive States Along a Reaction Coordinate in Enzymes.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00366
Defining an Optimal Metric for the Path Collective Variables.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00563
Multireference Stochastic Coupled Cluster.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00741
Three-Legged Tree Tensor Networks with SU(2) and Molecular Point Group Symmetry.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00071
Zero-Field Splitting Parameters from Four-Component Relativistic Methods.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00910
Solving the Trivial Crossing Problem While Preserving the Nodal Symmetry of the Wave Function
来源期刊:Journal of Chemical Theory and ComputationDOI:10.1021/acs.jctc.9b00302
Solvation Entropy Made Simple.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00214
Ab Initio Flexible Force Field for Metal-Organic Frameworks Using Dummy Model Coordination Bonds.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00135
Impact of Approximate DFT Density Delocalization Error on Potential Energy Surfaces in Transition Metal Chemistry.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00842
Low-cost molecular excited states from a state-averaged resonating Hartree-Fock approach.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00579
Local Embedding and Effective Downfolding in the Auxiliary-Field Quantum Monte Carlo Method.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01244
PELE-MSM: a Monte Carlo based protocol for the estimation of absolute binding free energies.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00753
Estimating Systematic Error and Uncertainty in Ab Initio Thermochemistry: I. Atomization Energies of Hydrocarbons in the ATOMIC(hc) Protocol.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00343
Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b01157
An Efficient Implementation of the Second-Order Quasidegenerate Perturbation Theory with Density-Fitting and Cholesky Decomposition Approximations: Is It Possible to Use Hartree-Fock Orbitals for a Multiconfigurational Perturbation Theory?
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00378
Conditional Reversible Work Coarse-Grained Models with Explicit Electrostatics-An Application to Butylmethylimidazolium Ionic Liquids.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.8b00881
Electrostatic Potential Optimized Molecular Models (ESP-MMs) for Molecular Simulations: CO, CO2, COS, H2S, N2, N2O, and SO2.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00653
Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation Between Binary Bilayers.
来源期刊:Journal of chemical theory and computationDOI:10.1021/acs.jctc.9b00815